species:   Rhsol
pid:       PID0477
parent:    Rhi-milR-120
paralog:   
locus:     KB317706.1:539986-540055
matures:   ['UCGAGUCGAGGAUUGUAGGGCC', 'AGUUGCAGACCAUCAUGAAGGGU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317706.1:539986-540055

0 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

       ***************************  ****************************      
CUCGAAUUGAUCGAGUCGAGGAUUGUAGGGCCUGUAAAGGAGUUGCAGACCAUCAUGAAGGGUAUUCGAA
.((((((...((..((.((((.((((((..(((....)))..)))))).)).))))...))..)))))).
----------UCGAGUCGAGGAUUGUAGGGCC-------------------------------------- l=22 a=0 c
----------------------------------------AGUUGCAGACCAUCAUGAAGGGU------- l=23 a=0 c*
---------AUCGAGUCGAGGAUUGUAGGGCCUG------------------------------------ l=25 a=2 ma
--------------------------------------GGAGUUGCAGACCAUCAUGAAGGGUA------ l=26 a=0 ma*

------UUGAUCGAGUCGAGGAUUGUAGGGC--------------------------------------- l=25 a=1 
---------AUCGAGUCGAGGAUUGUAGGGCCUG------------------------------------ l=25 a=2 (ma)
----------UCGAGUCGAGGAUUGUAGGGC--------------------------------------- l=21 a=1 
-----------CGAGUCGAGGAUUGUAGGGCCUG------------------------------------ l=23 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101100
fn-011
